Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a export atp-binding/permease protein msba | PH7735_00659 | Q2LVL0 | Negative | 690203 - 692077 | 68605.4 |
| soluble hydrogenase 42 kda subunit | PH7735_00660 | Q56YA5 | Positive | 692298 - 693494 | 42771.3 |
| hypothetical protein | PH7735_00661 | Not Available | Negative | 693491 - 693685 | 7403.41 |
| histidinol-phosphate aminotransferase 2 | PH7735_00662 | Q3AAT6 | Negative | 693759 - 694862 | 39308.2 |
| gluconolactonase precursor | PH7735_00663 | Q9M1B4 | Positive | 694956 - 696026 | 38864.3 |
| putative enoyl-coa hydratase echa8 | PH7735_00664 | Q9KJE7 | Positive | 696091 - 696885 | 28151.4 |
| sulfonamide resistance protein | PH7735_00665 | Not Available | Negative | 696968 - 698158 | 41436.6 |
| valine--trna ligase | PH7735_00666 | Q5LP30 | Negative | 698233 - 701361 | 115541.0 |
| phosphonate degradation operons associated hdig domain protein | PH7735_00667 | Not Available | Negative | 701528 - 702154 | 24008.9 |
| regulatory protein asnc | PH7735_00668 | Not Available | Negative | 702385 - 702876 | 18081.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
