Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gcv operon activator | PH7735_00029 | Not Available | Positive | 45252 - 46190 | 34901.4 |
| 3-keto-5-aminohexanoate cleavage enzyme | PH7735_00030 | Not Available | Negative | 46317 - 47255 | 34521.0 |
| leucine/isoleucine/valine transporter permease subunit | PH7735_00031 | P30296 | Negative | 47268 - 48296 | 36443.8 |
| liv-i protein h | PH7735_00032 | P21627 | Negative | 48296 - 49156 | 29823.4 |
| liv-i protein f | PH7735_00033 | Not Available | Negative | 49158 - 49865 | 25366.8 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_00034 | P55476 | Negative | 49858 - 50586 | 25867.4 |
| leucine abc transporter subunit substrate-binding protein livk | PH7735_00035 | Not Available | Negative | 50638 - 51912 | 44719.5 |
| putative 3-hydroxybutyryl-coa dehydrogenase | PH7735_00036 | Q988C8 | Negative | 51957 - 52886 | 33717.6 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_00037 | P9WGQ2 | Negative | 52890 - 53684 | 27295.0 |
| hypothetical protein | PH7735_00038 | O86372 | Negative | 53686 - 54030 | 12490.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
