Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| soluble hydrogenase 42 kda subunit | PH7735_00639 | Not Available | Positive | 669558 - 670685 | 40000.7 |
| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase | PH7735_00640 | Not Available | Negative | 670739 - 671941 | 43927.9 |
| hypothetical protein | PH7735_00641 | Not Available | Negative | 672000 - 672230 | 7974.81 |
| pyrimidine 5'-nucleotidase | PH7735_00642 | Not Available | Negative | 672354 - 672896 | 20171.8 |
| hth-type transcriptional regulator mcbr | PH7735_00643 | O05494 | Positive | 673113 - 673751 | 23635.1 |
| cellulose synthase catalytic subunit | PH7735_00644 | Q3MB01 | Negative | 673707 - 675623 | 70683.3 |
| carbamoyl-phosphate synthase small chain | PH7735_00645 | Q5LTN6 | Negative | 675711 - 676865 | 41039.2 |
| hypothetical protein | PH7735_00646 | P54464 | Positive | 677047 - 677505 | 16726.1 |
| hypothetical protein | PH7735_00647 | Not Available | Positive | 677713 - 678429 | 26957.8 |
| hemolysin, chromosomal | PH7735_00648 | Not Available | Positive | 678652 - 680706 | 71753.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
