Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spore cortex-lytic enzyme precursor | PH7735_00629 | Not Available | Positive | 660674 - 661327 | 24514.2 |
| bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase | PH7735_00630 | Not Available | Positive | 661445 - 662368 | 34006.9 |
| dihydropteroate synthase | PH7735_00631 | P0AC14 | Positive | 662408 - 663427 | 36213.4 |
| phosphoglucosamine mutase | PH7735_00632 | Q1GE79 | Positive | 663417 - 664760 | 47519.9 |
| s-adenosylmethionine/s-adenosylhomocysteine transporter | PH7735_00633 | Not Available | Negative | 664813 - 665730 | 32199.7 |
| hypothetical protein | PH7735_00634 | Not Available | Negative | 665727 - 666077 | 12320.3 |
| ketol-acid reductoisomerase | PH7735_00635 | Q5LTP7 | Negative | 666163 - 667185 | 36976.5 |
| leucine-responsive regulatory protein | PH7735_00636 | Not Available | Positive | 667319 - 667774 | 17292.2 |
| leucine-responsive regulatory protein | PH7735_00637 | Not Available | Positive | 667771 - 668235 | 17103.8 |
| hypothetical protein | PH7735_00638 | Not Available | Negative | 668232 - 669353 | 40034.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
