Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00619 | Not Available | Positive | 646730 - 646960 | 8466.2 |
| trk system potassium uptake protein trkh | PH7735_00620 | E1V6K4 | Positive | 647163 - 648611 | 51885.4 |
| putative 2-ketoarginine decarboxylase arui | PH7735_00621 | Q9HUI8 | Positive | 648613 - 650235 | 57746.6 |
| putative peptidoglycan binding domain protein | PH7735_00622 | Not Available | Negative | 650322 - 652088 | 63440.6 |
| glycine--trna ligase alpha subunit | PH7735_00623 | A1AZF6 | Positive | 652239 - 653168 | 34847.1 |
| inner membrane protein | PH7735_00624 | O32244 | Negative | 653177 - 653809 | 22116.3 |
| hypothetical protein | PH7735_00625 | Not Available | Positive | 653908 - 654432 | 19303.9 |
| glutamate permease | PH7735_00626 | P0AER8 | Positive | 654436 - 655647 | 42276.0 |
| glycine--trna ligase beta subunit | PH7735_00627 | Q1GE74 | Positive | 655658 - 657883 | 80930.0 |
| pyruvate, phosphate dikinase | PH7735_00628 | Q59754 | Positive | 657982 - 660522 | 91746.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
