Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00599 | Not Available | Positive | 626513 - 626710 | 6817.76 |
| putative periplasmic serine endoprotease degp-like precursor | PH7735_00600 | Q2YMX6 | Positive | 626881 - 628335 | 51258.7 |
| his-xaa-ser repeat protein hxsa | PH7735_00601 | Not Available | Negative | 628409 - 628954 | 19851.7 |
| ferredoxin vi | PH7735_00602 | P80306 | Positive | 629184 - 629507 | 11808.9 |
| fg-gap repeat | PH7735_00603 | Not Available | Positive | 629507 - 630283 | 27714.9 |
| tetrathionate response regulatory protein ttrr | PH7735_00604 | Not Available | Negative | 630307 - 630939 | 24180.8 |
| putative membrane protein | PH7735_00605 | Q98E66 | Negative | 631021 - 631914 | 32821.1 |
| phosphoribosylamine--glycine ligase | PH7735_00606 | Q8G2B1 | Negative | 632034 - 633296 | 44303.7 |
| exodeoxyribonuclease 7 large subunit | PH7735_00607 | Q1GF88 | Positive | 633373 - 634857 | 53989.1 |
| hypothetical protein | PH7735_00608 | Not Available | Negative | 634863 - 635252 | 14755.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
