Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| group 3 truncated hemoglobin ctb | PH7735_00569 | Not Available | Negative | 597506 - 597919 | 15702.7 |
| vit family protein | PH7735_00570 | Not Available | Positive | 598002 - 598712 | 25113.6 |
| isoleucine--trna ligase | PH7735_00571 | Q5LNR7 | Positive | 598976 - 601885 | 109702.0 |
| methylated-dna--protein-cysteine methyltransferase, constitutive | PH7735_00572 | Q8TI34 | Positive | 601964 - 602416 | 16082.4 |
| phosphatidylcholine synthase | PH7735_00573 | D0B707 | Negative | 602413 - 603105 | 26036.0 |
| 2-hydroxy-3-oxopropionate reductase | PH7735_00574 | Q9I5I6 | Negative | 603227 - 604033 | 28599.3 |
| hypothetical protein | PH7735_00575 | Not Available | Positive | 604196 - 604675 | 16857.0 |
| hypothetical protein | PH7735_00576 | Not Available | Negative | 604720 - 606027 | 48858.5 |
| flp pilus assembly protein, protease cpaa | PH7735_00577 | Not Available | Negative | 606140 - 606634 | 17896.4 |
| type iv pilus biogenesis/stability protein pilw | PH7735_00578 | Not Available | Negative | 606650 - 607498 | 31307.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
