Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroline-5-carboxylate reductase | PH7735_00559 | P22008 | Positive | 588112 - 588927 | 27584.3 |
| pp_00556 | PH7735_00560 | Not Available | Positive | 588920 - 589258 | Not Available |
| glycerate dehydrogenase | PH7735_00561 | B6YWH0 | Positive | 589255 - 590217 | 34922.3 |
| thymidine kinase | PH7735_00562 | Q5LUY8 | Negative | 590269 - 590847 | 21342.6 |
| hypothetical protein | PH7735_00563 | Not Available | Positive | 591207 - 591662 | 16746.9 |
| transcriptional regulator narl | PH7735_00564 | Not Available | Positive | 591665 - 592567 | 33932.8 |
| 3-oxoacyl-[acyl-carrier-protein] synthase 3 | PH7735_00565 | Q9HYV7 | Negative | 592921 - 594042 | 40819.2 |
| trna pseudouridine synthase a | PH7735_00566 | Q1GE00 | Negative | 594215 - 594985 | 28245.6 |
| putative atpase | PH7735_00567 | P76046 | Positive | 595107 - 596522 | 51801.8 |
| hypothetical protein | PH7735_00568 | Q98M18 | Positive | 596519 - 597514 | 35008.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
