Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine-responsive regulatory protein | PH7735_00549 | P56901 | Positive | 578965 - 579465 | 18636.5 |
| hypothetical protein | PH7735_00550 | Not Available | Negative | 579554 - 579700 | 5197.48 |
| laccase domain protein yfih | PH7735_00551 | Q92HU9 | Negative | 579844 - 580602 | 27099.1 |
| hypothetical protein | PH7735_00552 | Q54S83 | Negative | 580584 - 581660 | 38590.4 |
| prolipoprotein diacylglyceryl transferase | PH7735_00553 | Q5LUZ4 | Negative | 581653 - 582531 | 31879.5 |
| membrane fusogenic activity | PH7735_00554 | Not Available | Positive | 582657 - 582896 | 8973.7 |
| methionine import atp-binding protein metn | PH7735_00555 | Q58206 | Positive | 583041 - 583754 | 25567.5 |
| lipoprotein releasing system, transmembrane protein, lolc/e family | PH7735_00556 | Not Available | Positive | 583759 - 586122 | 85005.1 |
| macrolide-specific efflux protein maca precursor | PH7735_00557 | Not Available | Positive | 586129 - 587349 | 43450.7 |
| hypothetical protein | PH7735_00558 | Not Available | Positive | 587581 - 588081 | 19002.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
