Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n5-carboxyaminoimidazole ribonucleotide synthase | PH7735_00539 | P52559 | Negative | 569084 - 570160 | 38614.0 |
| n5-carboxyaminoimidazole ribonucleotide mutase | PH7735_00540 | Q9KVT7 | Negative | 570153 - 570641 | 16886.5 |
| hypothetical protein | PH7735_00541 | Not Available | Negative | 570837 - 571061 | 8556.43 |
| 16 kda heat shock protein a | PH7735_00542 | A8G7R8 | Positive | 571220 - 571633 | 15533.5 |
| putative small protein | PH7735_00543 | Not Available | Positive | 571636 - 571866 | 8657.13 |
| glycosyltransferase family 10 (fucosyltransferase) | PH7735_00544 | Not Available | Positive | 571985 - 572851 | 32541.8 |
| mg-chelatase subunit chld | PH7735_00545 | Not Available | Positive | 572981 - 573658 | 23632.1 |
| putative bifunctional sat/aps kinase | PH7735_00546 | Q8J0I4 | Negative | 573730 - 575808 | 77249.0 |
| adenylate cyclase 1 | PH7735_00547 | Not Available | Negative | 575948 - 577627 | 61055.9 |
| thioredoxin reductase | PH7735_00548 | Q92I02 | Negative | 577809 - 578750 | 33586.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
