Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| low specificity l-threonine aldolase | PH7735_00519 | Q9HTF1 | Negative | 550356 - 551402 | 38098.0 |
| hypothetical protein | PH7735_00520 | O68068 | Negative | 551402 - 551878 | 18176.4 |
| riboflavin biosynthesis protein ribf | PH7735_00521 | P22990 | Negative | 551875 - 552807 | 33778.1 |
| (r)-specific enoyl-coa hydratase | PH7735_00522 | C5AZ74 | Negative | 553087 - 553530 | 16358.9 |
| ump phosphatase | PH7735_00523 | Not Available | Negative | 553634 - 554509 | 31056.9 |
| acyl-coa dehydrogenase | PH7735_00524 | P79274 | Positive | 554702 - 555847 | 41727.8 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | PH7735_00525 | Not Available | Negative | 555976 - 557934 | 70460.1 |
| hypothetical protein | PH7735_00526 | Not Available | Positive | 558088 - 559266 | 45440.6 |
| hypothetical protein | PH7735_00527 | Not Available | Positive | 559438 - 559638 | 7457.5 |
| putative manganese-dependent inorganic pyrophosphatase | PH7735_00528 | Q043J4 | Negative | 559854 - 560774 | 33144.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
