Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00509 | P05447 | Positive | 541145 - 541885 | 27282.5 |
| f-type atpase subunit delta | PH7735_00510 | Q162S6 | Positive | 542170 - 542865 | 24546.8 |
| atp synthase subunit alpha | PH7735_00511 | Q5LNN9 | Positive | 542865 - 544403 | 54960.8 |
| f-atpase gamma subunit | PH7735_00512 | Q162S8 | Positive | 544416 - 545291 | 31663.8 |
| atp synthase subunit beta | PH7735_00513 | Q28TJ6 | Positive | 545308 - 546732 | 50059.9 |
| f-atpase epsilon subunit | PH7735_00514 | Q5LNP2 | Positive | 546744 - 547139 | 13635.0 |
| h-type lectin domain protein | PH7735_00515 | P05450 | Positive | 547247 - 547597 | 13008.3 |
| ribose-phosphate pyrophosphokinase | PH7735_00516 | B9KPJ0 | Negative | 547679 - 548698 | 37151.4 |
| 2-hydroxychromene-2-carboxylate isomerase | PH7735_00517 | Not Available | Positive | 548815 - 549414 | 21754.6 |
| dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system | PH7735_00518 | Not Available | Positive | 549418 - 550224 | 29142.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
