Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol-phosphate aminotransferase 2 | PH7735_00499 | Q5LNM6 | Positive | 528845 - 529930 | 38806.1 |
| arogenate dehydrogenase | PH7735_00500 | Q04983 | Positive | 529927 - 530853 | 33132.3 |
| hypothetical protein | PH7735_00501 | Not Available | Positive | 530850 - 531695 | 29631.1 |
| hypothetical protein | PH7735_00502 | Not Available | Negative | 531697 - 532692 | 36498.5 |
| putative protein involved in cation transport | PH7735_00503 | P39163 | Positive | 532759 - 533289 | 19888.6 |
| hypothetical protein | PH7735_00504 | Not Available | Positive | 533386 - 534588 | 43120.0 |
| outer membrane protein ompab | PH7735_00505 | Not Available | Positive | 534592 - 536718 | 76103.6 |
| putative peptidase | PH7735_00506 | Not Available | Negative | 536724 - 537692 | 34880.9 |
| atp-dependent clp protease atp-binding subunit clpa | PH7735_00507 | P05444 | Negative | 537689 - 540013 | 84842.5 |
| hydroxyacylglutathione hydrolase | PH7735_00508 | Q5LNN5 | Negative | 540316 - 541083 | 27310.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
