Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carnitinyl-coa dehydratase | PH7735_00479 | O53561 | Positive | 506748 - 507551 | 28219.5 |
| histidine--trna ligase | PH7735_00480 | Q5LVN3 | Positive | 507657 - 509147 | 54387.5 |
| histidine--trna ligase | PH7735_00481 | A6X3C2 | Positive | 509147 - 510232 | 40169.2 |
| atp phosphoribosyltransferase | PH7735_00482 | O08385 | Positive | 510229 - 510927 | 25325.2 |
| hypothetical protein | PH7735_00483 | Not Available | Negative | 510965 - 511396 | 16108.4 |
| ribonucleoside-diphosphate reductase nrdz | PH7735_00484 | P9WH76 | Positive | 511596 - 513875 | 83793.0 |
| mscs family inner membrane protein ynai | PH7735_00485 | O66994 | Positive | 514174 - 515265 | 39704.4 |
| hypothetical protein | PH7735_00486 | Not Available | Negative | 515284 - 515745 | 15827.7 |
| hypothetical protein | PH7735_00487 | Not Available | Negative | 515756 - 516016 | 9675.47 |
| putative inner membrane protein | PH7735_00488 | Not Available | Negative | 516177 - 517424 | 43829.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
