Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogen cyanide synthase subunit hcnc precursor | PH7735_00469 | Not Available | Negative | 494302 - 495372 | 38043.1 |
| l-glyceraldehyde 3-phosphate reductase | PH7735_00470 | O43488 | Negative | 495369 - 496307 | 33789.1 |
| putative ring-cleaving dioxygenase mhqa | PH7735_00471 | Not Available | Negative | 496461 - 497042 | 22112.0 |
| hypothetical protein | PH7735_00472 | Not Available | Negative | 497102 - 497713 | 22495.2 |
| purine-binding protein precursor | PH7735_00473 | Q2YKI6 | Negative | 497877 - 498959 | 38340.0 |
| urea abc transporter, permease protein urtb | PH7735_00474 | Not Available | Negative | 498999 - 499919 | 31701.8 |
| beta-methylgalactoside transporter inner membrane component | PH7735_00475 | D4GPW2 | Negative | 499919 - 500998 | 38129.6 |
| galactose/methyl galactoside import atp-binding protein mgla | PH7735_00476 | A2RKA7 | Negative | 501062 - 502579 | 53738.6 |
| dna polymerase iii subunit alpha | PH7735_00477 | Q9A700 | Positive | 502900 - 506418 | 129185.0 |
| slyx | PH7735_00478 | Not Available | Negative | 506452 - 506646 | 7246.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
