Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stringent starvation protein a | PH7735_00459 | Q9FRL8 | Negative | 485715 - 486404 | 25361.4 |
| rna polymerase sigma factor sigm | PH7735_00460 | Not Available | Negative | 486469 - 487011 | 20203.8 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | PH7735_00461 | A7HYW1 | Negative | 487008 - 487817 | 28936.1 |
| pantothenate synthetase | PH7735_00462 | Q5NL15 | Negative | 487814 - 488548 | 26251.6 |
| hypothetical protein | PH7735_00463 | Not Available | Positive | 488864 - 489211 | 12164.4 |
| aminomethyltransferase | PH7735_00464 | Not Available | Positive | 489388 - 491895 | 93198.0 |
| hypothetical protein | PH7735_00465 | Not Available | Negative | 491972 - 492559 | 19122.6 |
| ef hand | PH7735_00466 | Not Available | Negative | 492661 - 493065 | 14992.6 |
| alkylhydroperoxidase ahpd family core domain protein | PH7735_00467 | Q57498 | Negative | 493129 - 493464 | 11836.5 |
| hypothetical protein | PH7735_00468 | Q28FI7 | Negative | 493640 - 494302 | 23929.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
