Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rtx-i toxin determinant b | PH7735_00009 | Q03024 | Positive | 8574 - 10736 | 77736.8 |
| type i secretion system membrane fusion protein prse | PH7735_00010 | Not Available | Positive | 10733 - 12052 | 48507.9 |
| hypothetical protein | PH7735_00011 | Not Available | Negative | 12070 - 25419 | 460614.0 |
| dna-binding transcriptional activator of the sarp family protein | PH7735_00012 | Not Available | Negative | 26261 - 27889 | 60272.7 |
| hypothetical protein | PH7735_00013 | Not Available | Negative | 27922 - 28257 | 11778.8 |
| ycao-like family protein | PH7735_00014 | Not Available | Positive | 28327 - 29277 | 33441.7 |
| hypothetical protein | PH7735_00015 | Not Available | Negative | 29291 - 30538 | 46761.8 |
| hypothetical protein | PH7735_00016 | O81959 | Negative | 30711 - 32639 | 69840.5 |
| alpha-ribazole phosphatase | PH7735_00017 | Not Available | Negative | 33152 - 33697 | 19947.0 |
| universal archaeal kh-domain/beta-lactamase-domain protein | PH7735_00018 | Not Available | Negative | 33694 - 34761 | 38782.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
