Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroxy-acid dehydratase | PH7735_00439 | Q31QL1 | Positive | 467214 - 469064 | 65818.6 |
| putative acetyl-coa c-acetyltransferase yhfs | PH7735_00440 | O07618 | Negative | 469131 - 470300 | 40309.4 |
| putative acyl--coa ligase yhft | PH7735_00441 | O07619 | Negative | 470281 - 471786 | 53715.2 |
| biotin ecf transporter s component bioy | PH7735_00442 | Q2KBP7 | Negative | 471796 - 472326 | 18097.0 |
| energy-coupling factor transporter transmembrane protein bion | PH7735_00443 | Q03PY7 | Negative | 472435 - 473031 | 21710.3 |
| biotin transport atp-binding protein biom | PH7735_00444 | Q7N0N3 | Negative | 473031 - 473705 | 25127.5 |
| neu5ac permease | PH7735_00445 | Not Available | Negative | 473836 - 475263 | 50660.6 |
| trap-type c4-dicarboxylate transport system, small permease component | PH7735_00446 | Not Available | Negative | 475256 - 475891 | 22921.5 |
| trap transporter solute receptor, dctp family | PH7735_00447 | Not Available | Negative | 475963 - 476976 | 36504.9 |
| hypothetical protein | PH7735_00448 | Not Available | Negative | 477214 - 477438 | 8168.92 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
