Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00429 | Not Available | Negative | 459144 - 459257 | 4224.44 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase | PH7735_00430 | Q52987 | Positive | 459323 - 460234 | 33737.8 |
| putative phosphonates utilization atp-binding protein phnk | PH7735_00431 | P16678 | Positive | 460231 - 461001 | 28180.2 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnl | PH7735_00432 | P16679 | Positive | 461020 - 461700 | 24593.7 |
| ribose 1,5-bisphosphate phosphokinase phnn | PH7735_00433 | Q1GL02 | Positive | 461700 - 462248 | 19766.5 |
| putative phosphonate metabolism protein | PH7735_00434 | A6SU94 | Negative | 462224 - 462910 | 24971.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | PH7735_00435 | P16689 | Positive | 462963 - 464108 | 41173.0 |
| hydrogen cyanide synthase subunit hcnb | PH7735_00436 | Q59160 | Negative | 464160 - 465533 | 48832.3 |
| hydrogen cyanide synthase subunit hcna | PH7735_00437 | Not Available | Negative | 465530 - 465841 | 11003.2 |
| hydrogen cyanide synthase subunit hcnc precursor | PH7735_00438 | Q59159 | Negative | 465822 - 467120 | 46618.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
