Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding/permease protein cydd | PH7735_00409 | Q52402 | Positive | 436120 - 437778 | 58829.9 |
| putative abc transporter atp-binding protein | PH7735_00410 | P23886 | Positive | 437775 - 439421 | 57916.9 |
| cytochrome d ubiquinol oxidase subunit 1 | PH7735_00411 | Q09049 | Positive | 439605 - 441203 | 59378.6 |
| cytochrome d ubiquinol oxidase subunit 2 | PH7735_00412 | P45020 | Positive | 441209 - 442372 | 41970.9 |
| cyd operon protein ybgt | PH7735_00413 | Q2YKD6 | Positive | 442388 - 442501 | 4412.41 |
| hypothetical protein | PH7735_00414 | Not Available | Positive | 442681 - 443799 | 39864.5 |
| dna polymerase iv | PH7735_00415 | Not Available | Positive | 443916 - 445382 | 54098.2 |
| error-prone dna polymerase | PH7735_00416 | Q5LVN0 | Positive | 445360 - 448806 | 128330.0 |
| putative hth-type transcriptional regulator ydfh | PH7735_00417 | Not Available | Negative | 448809 - 449480 | 24697.8 |
| phosphate-import atp-binding protein phnc | PH7735_00418 | Q5LVC2 | Positive | 449708 - 450502 | 29218.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
