Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_00399 | P73574 | Negative | 425852 - 426676 | 28427.9 |
| acyl-coa dehydrogenase | PH7735_00400 | P51174 | Negative | 426690 - 427838 | 42512.7 |
| (3r)-hydroxyacyl-acp dehydratase subunit hadb | PH7735_00401 | Not Available | Negative | 427857 - 428273 | 14602.4 |
| maoc like domain protein | PH7735_00402 | A5CUU0 | Negative | 428270 - 428752 | 17341.5 |
| 3-oxoadipyl-coa/3-oxo-5,6-dehydrosuberyl-coa thiolase | PH7735_00403 | O62742 | Negative | 428755 - 429942 | 41818.4 |
| ben and cat operon transcriptional regulator | PH7735_00404 | Not Available | Positive | 430041 - 430976 | 33795.1 |
| carnitine catabolism transcriptional activator | PH7735_00405 | Not Available | Positive | 431039 - 432040 | 37056.5 |
| Trna-met | Not Available | Not Available | Positive | 432128 - 432204 | Not Available |
| hypothetical protein | PH7735_00407 | Not Available | Positive | 432343 - 432969 | 21944.3 |
| serralysin c precursor | PH7735_00408 | Not Available | Positive | 433110 - 435965 | 99731.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
