Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00389 | Not Available | Positive | 419511 - 419702 | 7076.66 |
| hypothetical protein | PH7735_00390 | Q1GK31 | Positive | 419927 - 420769 | 30535.9 |
| hypothetical protein | PH7735_00391 | Q5LW58 | Positive | 420773 - 421054 | 10635.8 |
| hypothetical protein | PH7735_00392 | Q1GK29 | Positive | 421058 - 421438 | 14099.5 |
| hypothetical protein | PH7735_00393 | Q1GK28 | Positive | 421438 - 422145 | 26505.3 |
| 50s ribosomal protein l16 | PH7735_00394 | Q1GK27 | Positive | 422159 - 422572 | 15652.5 |
| pyridoxamine 5'-phosphate oxidase, fmn-binding family | PH7735_00395 | Not Available | Positive | 422711 - 423328 | 22899.4 |
| electron transfer dm13 | PH7735_00396 | Not Available | Negative | 423497 - 423964 | 16709.0 |
| hypothetical protein | PH7735_00397 | Not Available | Positive | 424091 - 424711 | 23493.7 |
| succinyl-coa:(r)-benzylsuccinate coa-transferase subunit bbse | PH7735_00398 | O06543 | Negative | 424760 - 425839 | 38330.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
