Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_04088 | Not Available | Positive | 4334803 - 4335042 | 8855.64 |
| ribosomal rna large subunit methyltransferase f | PH7735_04089 | Q3IBW7 | Positive | 4335462 - 4336388 | 35019.3 |
| neu5ac permease | PH7735_04090 | Not Available | Negative | 4336674 - 4337987 | 47097.6 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | PH7735_04091 | Not Available | Negative | 4337984 - 4338697 | 27096.4 |
| c4-dicarboxylate-binding periplasmic protein precursor | PH7735_04092 | Not Available | Negative | 4338760 - 4339743 | 35215.2 |
| d-amino acid dehydrogenase small subunit | PH7735_04093 | Q2W3H2 | Negative | 4339778 - 4341028 | 44966.1 |
| hth-type transcriptional activator cmpr | PH7735_04094 | P03030 | Positive | 4341139 - 4342068 | 34925.6 |
| hypothetical protein | PH7735_04095 | R1ENF4 | Positive | 4342078 - 4342764 | 24341.5 |
| Trna-met | Not Available | Not Available | Positive | 4342979 - 4343055 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 4346763 - 4346838 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
