Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative aldehyde dehydrogenase alda | PH7735_04068 | O34660 | Positive | 4316444 - 4317889 | 51378.0 |
| 4-carboxymuconolactone decarboxylase | PH7735_04069 | Not Available | Positive | 4317893 - 4318273 | 14079.9 |
| cysji operon transcriptional activator | PH7735_04070 | P39647 | Negative | 4319353 - 4320315 | 35652.8 |
| sulfate starvation-induced protein 7 | PH7735_04071 | P30859 | Positive | 4320452 - 4321228 | 27852.3 |
| inner membrane amino-acid abc transporter permease protein yecs | PH7735_04072 | P0AFT3 | Positive | 4321412 - 4322059 | 23399.5 |
| inner membrane amino-acid abc transporter permease protein yecs | PH7735_04073 | Not Available | Positive | 4322077 - 4322733 | 24041.4 |
| glutamine transport atp-binding protein glnq | PH7735_04074 | P10346 | Positive | 4322749 - 4323519 | 28766.0 |
| taurine--pyruvate aminotransferase | PH7735_04075 | O34662 | Positive | 4323516 - 4324871 | 48835.4 |
| acetate coa-transferase subunit alpha | PH7735_04076 | O34317 | Positive | 4324868 - 4325560 | 24253.2 |
| putative succinyl-coa:3-ketoacid coenzyme a transferase subunit b | PH7735_04077 | P63651 | Positive | 4325508 - 4326200 | 24213.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
