Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate-1-semialdehyde 2,1-aminomutase | PH7735_04058 | B0CC57 | Negative | 4304751 - 4306028 | 45584.7 |
| l-ala-d/l-glu epimerase | PH7735_04059 | A0NXQ8 | Negative | 4306032 - 4307135 | 39370.4 |
| muconate cycloisomerase 1 | PH7735_04060 | D7A0Y2 | Negative | 4307132 - 4308238 | 39589.5 |
| l-ala-d/l-glu epimerase | PH7735_04061 | Not Available | Negative | 4308235 - 4309341 | 39963.5 |
| d-arabitol-phosphate dehydrogenase | PH7735_04062 | Not Available | Negative | 4309338 - 4310420 | 38106.3 |
| aminomethyltransferase | PH7735_04063 | Not Available | Negative | 4310417 - 4312852 | 89353.1 |
| putative hth-type transcriptional regulator ybbh | PH7735_04064 | Not Available | Positive | 4312922 - 4313809 | 32441.3 |
| anthranilate 1,2-dioxygenase large subunit | PH7735_04065 | P0ABR8 | Positive | 4313806 - 4314885 | 40897.9 |
| maleate cis-trans isomerase | PH7735_04066 | Not Available | Positive | 4314878 - 4315711 | 31192.1 |
| hypothetical protein | PH7735_04067 | Q9ASR4 | Positive | 4315704 - 4316447 | 28615.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
