Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase | PH7735_04048 | Not Available | Negative | 4292669 - 4294177 | 55508.9 |
| carnitine catabolism transcriptional activator | PH7735_04049 | Not Available | Positive | 4295072 - 4296100 | 37563.8 |
| l-carnitine dehydrogenase | PH7735_04050 | D7B2S5 | Negative | 4296081 - 4297013 | 33486.9 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_04051 | Not Available | Negative | 4297013 - 4297747 | 25352.4 |
| gamma-aminobutyraldehyde dehydrogenase | PH7735_04052 | A4WAR9 | Negative | 4297747 - 4299165 | 49862.5 |
| 3-keto-5-aminohexanoate cleavage enzyme | PH7735_04053 | Not Available | Negative | 4299176 - 4300051 | 32065.5 |
| cyclopentanol dehydrogenase | PH7735_04054 | Q6WVP7 | Negative | 4300108 - 4300902 | 27834.0 |
| choline-sulfatase | PH7735_04055 | Not Available | Negative | 4300899 - 4302434 | 57099.2 |
| anthranilate 1,2-dioxygenase large subunit | PH7735_04056 | Not Available | Negative | 4302431 - 4303552 | 42014.0 |
| site-specific tyrosine recombinase xerc | PH7735_04057 | Not Available | Negative | 4303895 - 4304527 | 24044.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
