Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-glucose-1-phosphate phosphatase yihx | PH7735_04039 | Not Available | Negative | 4283801 - 4284421 | 23623.9 |
| carboxylate/amino acid/amine transporter | PH7735_04040 | Not Available | Negative | 4284456 - 4285424 | 35006.6 |
| hypothetical protein | PH7735_04041 | Q16D98 | Negative | 4285509 - 4285961 | 16031.3 |
| s-formylglutathione hydrolase | PH7735_04042 | A1AXZ2 | Negative | 4285968 - 4286801 | 30385.7 |
| cyclolysin | PH7735_04043 | Not Available | Positive | 4286997 - 4288916 | 65080.4 |
| ion channel | PH7735_04044 | Not Available | Negative | 4288984 - 4289628 | 22949.8 |
| alkanal monooxygenase alpha chain | PH7735_04045 | P0ADV6 | Positive | 4289847 - 4290845 | 35328.4 |
| putative transporter yfdv | PH7735_04046 | Not Available | Negative | 4290853 - 4291782 | 32786.1 |
| dna-binding transcriptional repressor acrr | PH7735_04047 | Not Available | Positive | 4291899 - 4292543 | 24381.4 |
| Trna-pseudo | Not Available | Not Available | Positive | 4292638 - 4292712 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
