Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_04029 | O67610 | Positive | 4273889 - 4274647 | 26279.3 |
| hypothetical protein | PH7735_04030 | Not Available | Negative | 4274675 - 4275052 | 14091.1 |
| hypothetical protein | PH7735_04031 | Not Available | Negative | 4275074 - 4275847 | 29915.3 |
| caax amino terminal protease self-immunity | PH7735_04032 | Not Available | Positive | 4276046 - 4276927 | 32068.3 |
| acetyl-coenzyme a carboxylase carboxyl transferase subunit beta | PH7735_04033 | Q28WD5 | Positive | 4277003 - 4277953 | 34935.2 |
| folylpolyglutamate synthase | PH7735_04034 | P15925 | Positive | 4278073 - 4279344 | 45303.7 |
| afg1-like atpase | PH7735_04035 | Q3V384 | Negative | 4279535 - 4280611 | 40318.7 |
| nitrate transporter | PH7735_04036 | O31444 | Positive | 4280750 - 4281982 | 43322.8 |
| 4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase | PH7735_04037 | Not Available | Negative | 4281979 - 4282893 | 33482.4 |
| ornithine cyclodeaminase | PH7735_04038 | A1B196 | Negative | 4282890 - 4283804 | 33297.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
