Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine aminopeptidase | PH7735_04019 | Q9ZCD3 | Negative | 4264546 - 4265352 | 29099.7 |
| sugar fermentation stimulation protein a | PH7735_04020 | Q5LM03 | Negative | 4265461 - 4266165 | 26352.6 |
| nmn amidohydrolase-like protein yfay | PH7735_04021 | Q22017 | Positive | 4266212 - 4266931 | 25244.2 |
| acetyltransferase (gnat) family protein | PH7735_04022 | Not Available | Positive | 4266928 - 4267656 | 26471.8 |
| putative peroxidase-related enzyme | PH7735_04023 | Not Available | Positive | 4267668 - 4268240 | 21296.4 |
| outer membrane protein arfa | PH7735_04024 | Not Available | Positive | 4268237 - 4269187 | 34061.4 |
| d-malate degradation protein r | PH7735_04025 | P43011 | Negative | 4269269 - 4270174 | 33150.4 |
| auxin efflux carrier | PH7735_04026 | Not Available | Negative | 4270318 - 4271244 | 32391.4 |
| 2,4-dienoyl-coa reductase | PH7735_04027 | P42593 | Negative | 4271356 - 4273383 | 72655.0 |
| hypothetical protein | PH7735_04028 | Not Available | Negative | 4273462 - 4273776 | 11873.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
