Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aromatic-amino-acid aminotransferase | PH7735_03999 | P95468 | Positive | 4244541 - 4245725 | 42694.9 |
| patatin | PH7735_04000 | Not Available | Positive | 4245844 - 4247037 | 43440.6 |
| hemin uptake protein | PH7735_04001 | Not Available | Negative | 4247044 - 4247202 | 5716.17 |
| ammonia transporter | PH7735_04002 | P54147 | Negative | 4247482 - 4248816 | 46377.1 |
| nitrogen regulatory protein p-ii 1 | PH7735_04003 | P43795 | Negative | 4248840 - 4249178 | 12136.9 |
| penicillin-binding protein f | PH7735_04004 | P02919 | Positive | 4249691 - 4251619 | 68963.7 |
| putative phospholipid-binding protein mlac precursor | PH7735_04005 | Not Available | Negative | 4251654 - 4252247 | 21593.2 |
| putative phospholipid-binding lipoprotein mlaa precursor | PH7735_04006 | Not Available | Negative | 4252249 - 4253025 | 28454.0 |
| type i secretion system atp-binding protein prsd | PH7735_04007 | Q7ANN4 | Positive | 4253192 - 4254928 | 62693.8 |
| type i secretion system membrane fusion protein prse | PH7735_04008 | Q7ANN5 | Positive | 4254925 - 4256241 | 49092.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
