Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase family associated with various cellular activities (aaa) | PH7735_03979 | Not Available | Positive | 4221391 - 4223325 | 71184.6 |
| hypothetical protein | PH7735_03980 | Not Available | Positive | 4223322 - 4224239 | 35095.5 |
| hypothetical protein | PH7735_03981 | Not Available | Positive | 4224227 - 4225576 | 50537.3 |
| hypothetical protein | PH7735_03982 | Not Available | Positive | 4225580 - 4225846 | 9990.47 |
| hypothetical protein | PH7735_03983 | P43999 | Positive | 4225859 - 4226518 | 25482.5 |
| outer membrane protein | PH7735_03984 | Not Available | Positive | 4226515 - 4227240 | 26146.8 |
| formate-dependent nitrite reductase, membrane component | PH7735_03985 | D3RNN6 | Negative | 4227241 - 4228113 | 31400.0 |
| tetrathionate reductase electron transport protein | PH7735_03986 | D3RNN7 | Negative | 4228113 - 4228883 | 28229.4 |
| tetrathionate reductase subunit a precursor | PH7735_03987 | D3RNN8 | Negative | 4228876 - 4231689 | 103979.0 |
| hypothetical protein | PH7735_03988 | Q6RH51 | Negative | 4231718 - 4232668 | 33096.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
