Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| demethylrebeccamycin-d-glucose o-methyltransferase | PH7735_03959 | Not Available | Positive | 4206249 - 4206884 | 23166.9 |
| ytoq family protein | PH7735_03960 | O34305 | Positive | 4206979 - 4207428 | 16307.3 |
| disulfide-bond oxidoreductase yfcg | PH7735_03961 | Not Available | Negative | 4207450 - 4208148 | 25307.4 |
| large-conductance mechanosensitive channel | PH7735_03962 | Q5LMR7 | Positive | 4208298 - 4208732 | 15366.0 |
| small-conductance mechanosensitive channel | PH7735_03963 | P0C0S2 | Positive | 4208817 - 4209623 | 28890.2 |
| hypothetical protein | PH7735_03964 | Not Available | Negative | 4209707 - 4209949 | 8930.09 |
| hypothetical protein | PH7735_03965 | Not Available | Negative | 4209939 - 4210649 | 27142.9 |
| hypothetical protein | PH7735_03966 | Not Available | Negative | 4210781 - 4210960 | 6941.63 |
| hypothetical protein | PH7735_03967 | Not Available | Negative | 4211014 - 4211196 | 6804.35 |
| alanine dehydrogenase | PH7735_03968 | E1V931 | Negative | 4211209 - 4212327 | 38448.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
