Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-ala-d/l-glu epimerase | PH7735_03939 | P51981 | Positive | 4188748 - 4189713 | 34100.8 |
| hypothetical protein | PH7735_03940 | Not Available | Positive | 4189710 - 4190633 | 32884.6 |
| d-alanine aminotransferase | PH7735_03941 | Q5HNG0 | Positive | 4190698 - 4191558 | 31830.2 |
| ligb family dioxygenase | PH7735_03942 | A0A0F7CUE8 | Negative | 4191610 - 4192404 | 29397.8 |
| hypothetical protein | PH7735_03943 | Not Available | Negative | 4192521 - 4192844 | 12496.6 |
| hypothetical protein | PH7735_03944 | Not Available | Negative | 4192935 - 4193177 | 9091.31 |
| 5-carboxymethyl-2-hydroxymuconate delta-isomerase | PH7735_03945 | Not Available | Negative | 4193298 - 4193645 | 12414.0 |
| putative n-formylglutamate amidohydrolase | PH7735_03946 | Not Available | Negative | 4193649 - 4194398 | 28373.4 |
| pyruvate kinase | PH7735_03947 | Not Available | Positive | 4194519 - 4195964 | 51889.2 |
| hypothetical protein | PH7735_03948 | Not Available | Positive | 4195994 - 4196218 | 7926.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
