Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03919 | Not Available | Positive | 4168438 - 4171182 | 98614.7 |
| putative membrane protein | PH7735_03920 | Not Available | Positive | 4171179 - 4173224 | 74493.3 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | PH7735_03921 | Q1GCX7 | Positive | 4173378 - 4174898 | 54224.8 |
| membrane-bound metallopeptidase | PH7735_03922 | Not Available | Positive | 4174895 - 4176022 | 39514.5 |
| putative ctpa-like serine protease | PH7735_03923 | Q44879 | Positive | 4176036 - 4177376 | 47653.9 |
| rna pyrophosphohydrolase | PH7735_03924 | Q16BL5 | Positive | 4177530 - 4178027 | 18938.2 |
| hemolysin, chromosomal | PH7735_03925 | Not Available | Negative | 4178040 - 4179362 | 45814.4 |
| hypothetical protein | PH7735_03926 | Not Available | Negative | 4179381 - 4179524 | 5411.13 |
| Trna-ala | Not Available | Not Available | Positive | 4179693 - 4179768 | Not Available |
| protein of unknown function (fydln_acid) | PH7735_03928 | Not Available | Negative | 4179854 - 4180180 | 11954.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
