Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese transport system membrane protein mntb | PH7735_03909 | O35024 | Negative | 4155567 - 4156772 | 42598.8 |
| putative zinc transport system atp-binding protein adcc | PH7735_03910 | P96117 | Negative | 4156785 - 4157591 | 29084.2 |
| tromp-1 | PH7735_03911 | O34385 | Negative | 4157602 - 4158564 | 34973.9 |
| deoxyribose-phosphate aldolase | PH7735_03912 | Q91YP3 | Positive | 4158749 - 4159744 | 36005.5 |
| putative aldehyde dehydrogenase alda | PH7735_03913 | A6QR56 | Positive | 4159758 - 4162094 | 83263.1 |
| dna polymerase i | PH7735_03914 | Q9S1G2 | Positive | 4162181 - 4164988 | 103069.0 |
| putative hydroxypyruvate isomerase ygbm | PH7735_03915 | Q0KBD1 | Negative | 4165016 - 4165774 | 27709.0 |
| hypothetical protein | PH7735_03916 | Not Available | Negative | 4165906 - 4166496 | 21312.6 |
| gas vesicle protein gvpn | PH7735_03917 | Not Available | Positive | 4166565 - 4167572 | 36322.9 |
| hypothetical protein | PH7735_03918 | Not Available | Positive | 4167569 - 4168441 | 32720.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
