Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine dehydrogenase | PH7735_03899 | P38997 | Positive | 4142588 - 4143643 | 37894.9 |
| lysine 6-dehydrogenase | PH7735_03900 | Q9P4R4 | Positive | 4143654 - 4144796 | 41938.6 |
| hypothetical protein | PH7735_03901 | Not Available | Positive | 4144935 - 4146845 | 70241.7 |
| hypothetical protein | PH7735_03902 | Not Available | Negative | 4146903 - 4147229 | 11955.2 |
| dna recombination protein rmuc | PH7735_03903 | Q9PG89 | Negative | 4147363 - 4148514 | 41967.6 |
| dna mismatch repair protein mutl | PH7735_03904 | B4RA70 | Negative | 4148577 - 4150457 | 67065.8 |
| hypothetical protein | PH7735_03905 | Not Available | Positive | 4150723 - 4150935 | 7583.69 |
| beta-lactamase hydrolase-like protein | PH7735_03906 | Q54DK1 | Positive | 4150960 - 4152633 | 60061.2 |
| putative sulfate transporterc/mt1781 | PH7735_03907 | Q9FY46 | Positive | 4152861 - 4154615 | 62175.6 |
| manganese transport system membrane protein mntb | PH7735_03908 | P96119 | Negative | 4154644 - 4155570 | 32350.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
