Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine betaine transport atp-binding protein opuaa | PH7735_03889 | P46920 | Positive | 4130396 - 4131448 | 38236.4 |
| glycine betaine transport system permease protein opuab | PH7735_03890 | Not Available | Positive | 4131445 - 4133511 | 73033.5 |
| hypothetical protein | PH7735_03891 | Not Available | Negative | 4133576 - 4133764 | 6933.19 |
| ribosomal rna small subunit methyltransferase b | PH7735_03892 | B2VK95 | Positive | 4133841 - 4135115 | 45704.1 |
| heparinase ii/iii-like protein | PH7735_03893 | Not Available | Positive | 4135237 - 4136985 | 63838.9 |
| bifunctional purine biosynthesis protein purh | PH7735_03894 | Q5LN38 | Positive | 4137007 - 4138596 | 55735.4 |
| lipoprotein signal peptidase | PH7735_03895 | Q1QIP9 | Positive | 4138721 - 4139191 | 17100.0 |
| hypothetical protein | PH7735_03896 | Not Available | Positive | 4139244 - 4139756 | 18370.7 |
| protease3 | PH7735_03897 | P55679 | Positive | 4139850 - 4141190 | 49551.7 |
| peptidase m16 inactive domain protein | PH7735_03898 | P55680 | Positive | 4141187 - 4142485 | 46508.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
