Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ndp-hexose 2,3-dehydratase | PH7735_03879 | Q9RR31 | Negative | 4118333 - 4119661 | 49968.9 |
| galnac(5)-dinacbac-pp-undecaprenol beta-1,3-glucosyltransferase | PH7735_03880 | Not Available | Negative | 4119649 - 4120644 | 37387.2 |
| hypothetical protein | PH7735_03881 | Not Available | Negative | 4120674 - 4121360 | 24627.9 |
| polyribonucleotide nucleotidyltransferase | PH7735_03882 | Q5LN23 | Positive | 4121643 - 4123793 | 77351.5 |
| l-lactate dehydrogenase | PH7735_03883 | P9WND4 | Positive | 4123979 - 4125127 | 41922.1 |
| hemolysin, chromosomal | PH7735_03884 | Not Available | Negative | 4125180 - 4127039 | 64907.7 |
| hypothetical protein | PH7735_03885 | Not Available | Negative | 4127141 - 4127887 | 27173.3 |
| ribosome-binding factor a | PH7735_03886 | Q1GKJ7 | Negative | 4127884 - 4128285 | 15066.0 |
| 4-hydroxy-tetrahydrodipicolinate reductase | PH7735_03887 | Q5LLT7 | Positive | 4128418 - 4129227 | 28180.9 |
| glycine betaine/carnitine transport binding protein gbuc precursor | PH7735_03888 | Not Available | Positive | 4129427 - 4130392 | 34255.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
