Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate-selective porin | PH7735_03859 | Not Available | Positive | 4098151 - 4099431 | 45453.0 |
| hypothetical protein | PH7735_03860 | Not Available | Positive | 4099395 - 4099571 | 6495.78 |
| putative integral membrane protein | PH7735_03861 | Not Available | Positive | 4099510 - 4099893 | 13564.5 |
| hypothetical protein | PH7735_03862 | Not Available | Positive | 4100010 - 4100834 | 29773.9 |
| hypothetical protein | PH7735_03863 | Not Available | Positive | 4100857 - 4101342 | 17204.1 |
| small-conductance mechanosensitive channel | PH7735_03864 | Q55717 | Positive | 4101351 - 4102646 | 46899.8 |
| outer membrane protein oprm precursor | PH7735_03865 | P24145 | Positive | 4102647 - 4104044 | 50997.1 |
| putative assembly protein | PH7735_03866 | Not Available | Positive | 4104046 - 4106754 | 96158.9 |
| hypothetical protein | PH7735_03867 | Not Available | Positive | 4106809 - 4107291 | 16787.6 |
| putative mscs family protein.1 precursor | PH7735_03868 | Q57634 | Positive | 4107331 - 4108986 | 60684.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
