Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03839 | A8LMZ2 | Negative | 4079032 - 4079157 | 5054.36 |
| Trna-val | Not Available | Not Available | Positive | 4079228 - 4079302 | Not Available |
| n-formylglutamate deformylase | PH7735_03841 | Not Available | Positive | 4079457 - 4080317 | 31631.7 |
| dna polymerase iv | PH7735_03842 | Q8YC76 | Negative | 4080319 - 4081572 | 46231.8 |
| nudix domain protein | PH7735_03843 | Not Available | Positive | 4081606 - 4082040 | 15940.9 |
| orotidine 5'-phosphate decarboxylase | PH7735_03844 | Q28K56 | Negative | 4082122 - 4082817 | 24195.1 |
| hypothetical protein | PH7735_03845 | Not Available | Negative | 4082927 - 4083208 | 10473.6 |
| chaperone protein clpb | PH7735_03846 | Q98G96 | Positive | 4083418 - 4086033 | 95801.7 |
| hypothetical protein | PH7735_03847 | Not Available | Negative | 4086127 - 4086462 | 12147.5 |
| cyclolysin | PH7735_03848 | Not Available | Negative | 4086946 - 4088166 | 41244.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
