Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc-finger domain protein | PH7735_03819 | Not Available | Positive | 4058021 - 4058203 | 6514.66 |
| alpha-ribazole phosphatase | PH7735_03820 | Not Available | Negative | 4058253 - 4058912 | 24668.4 |
| formate dehydrogenase h | PH7735_03821 | P61159 | Positive | 4059123 - 4061900 | 101254.0 |
| allantoate amidohydrolase | PH7735_03822 | Q9F464 | Positive | 4062039 - 4063247 | 42874.8 |
| wgr domain protein | PH7735_03823 | Not Available | Negative | 4063237 - 4063485 | 9518.4 |
| hypothetical protein | PH7735_03824 | Not Available | Negative | 4063542 - 4063823 | 9841.7 |
| lysr family transcriptional regulator | PH7735_03825 | Not Available | Positive | 4063922 - 4064794 | 31573.1 |
| mapeg family protein | PH7735_03826 | Not Available | Negative | 4064855 - 4065253 | 14503.3 |
| dye resistance protein | PH7735_03827 | Q9HUI2 | Negative | 4065346 - 4066050 | 25862.8 |
| blue-light-activated protein | PH7735_03828 | P07167 | Negative | 4066055 - 4067962 | 69710.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
