Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| regulatory protein of adaptative response | PH7735_03809 | P26189 | Negative | 4048901 - 4049788 | 32831.3 |
| hypothetical protein | PH7735_03810 | Not Available | Positive | 4049927 - 4050274 | 12527.8 |
| ion transport protein | PH7735_03811 | Not Available | Positive | 4050360 - 4051154 | 29687.0 |
| bacterial regulatory proteins, tetr family | PH7735_03812 | Not Available | Positive | 4051224 - 4051799 | 21032.4 |
| fatty acid hydroxylase superfamily protein | PH7735_03813 | P68434 | Positive | 4051796 - 4052638 | 32297.5 |
| endonuclease iii | PH7735_03814 | P44319 | Positive | 4052690 - 4053334 | 24154.2 |
| 5-dehydro-2-deoxygluconokinase | PH7735_03815 | Q55480 | Positive | 4053331 - 4054314 | 34733.1 |
| sulfotransferase family protein | PH7735_03816 | Not Available | Negative | 4054409 - 4055227 | 31477.0 |
| core-2/i-branching enzyme | PH7735_03817 | Not Available | Positive | 4055378 - 4056955 | 61331.4 |
| daunorubicin/doxorubicin resistance atp-binding protein drra | PH7735_03818 | Not Available | Negative | 4057002 - 4057934 | 33836.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
