Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoglycoside acetyltransferase regulator | PH7735_03799 | Q9K0N0 | Positive | 4039001 - 4040533 | 56471.9 |
| 4-hydroxy-tetrahydrodipicolinate synthase | PH7735_03800 | Q5LMK7 | Negative | 4040654 - 4041526 | 30537.7 |
| soluble lytic murein transglycosylase precursor | PH7735_03801 | P44888 | Positive | 4041670 - 4043619 | 72751.6 |
| carboxylate/amino acid/amine transporter | PH7735_03802 | Not Available | Negative | 4043623 - 4044489 | 31535.5 |
| trna 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmc | PH7735_03803 | A1TZU2 | Negative | 4044486 - 4045160 | 24573.8 |
| glycine oxidase | PH7735_03804 | Not Available | Positive | 4045222 - 4046256 | 36562.6 |
| hypothetical protein | PH7735_03805 | A9WC41 | Negative | 4046262 - 4047065 | 29644.2 |
| virulence protein | PH7735_03806 | Q502D1 | Positive | 4047092 - 4047505 | 15421.4 |
| fmn-dependent nadph-azoreductase | PH7735_03807 | D3KVM6 | Negative | 4047516 - 4048058 | 19559.5 |
| inner membrane lipoprotein yiad precursor | PH7735_03808 | P37665 | Negative | 4048165 - 4048818 | 22626.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
