Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-lys | Not Available | Not Available | Positive | 4026232 - 4026307 | Not Available |
| n-substituted formamide deformylase precursor | PH7735_03790 | O34355 | Positive | 4026749 - 4028590 | 66592.5 |
| dna gyrase subunit b | PH7735_03791 | P0CAX1 | Negative | 4028758 - 4031175 | 89638.0 |
| dna replication and repair protein recf | PH7735_03792 | Q2KDX0 | Negative | 4031409 - 4032515 | 40503.5 |
| dna polymerase iii subunit beta | PH7735_03793 | P0CAU5 | Negative | 4032580 - 4033698 | 40549.1 |
| chromosomal replication initiator protein dnaa | PH7735_03794 | Q16DK6 | Negative | 4033920 - 4035518 | 59823.3 |
| hypothetical protein | PH7735_03795 | Q1GC53 | Negative | 4035803 - 4036066 | 9802.87 |
| putative enoyl-coa hydratase echa8 | PH7735_03796 | Q52995 | Negative | 4036315 - 4037091 | 27958.7 |
| formamidopyrimidine-dna glycosylase | PH7735_03797 | Q5LWT9 | Negative | 4037155 - 4038006 | 31653.1 |
| ubiquinone/menaquinone biosynthesis methyltransferase ubie | PH7735_03798 | Q1GC56 | Positive | 4038261 - 4039004 | 27889.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
