Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-insensitive murein endopeptidase precursor | PH7735_03769 | P44566 | Positive | 4008188 - 4009102 | 33527.2 |
| hypothetical protein | PH7735_03770 | Not Available | Positive | 4009075 - 4009974 | 33446.6 |
| inner membrane protein yhhq | PH7735_03771 | P37619 | Positive | 4010063 - 4010698 | 22739.5 |
| hypothetical protein | PH7735_03772 | Not Available | Positive | 4010695 - 4010907 | 7497.11 |
| peptidyl-trna hydrolase yaej | PH7735_03773 | P45388 | Positive | 4011033 - 4011458 | 15995.5 |
| carnitine catabolism transcriptional activator | PH7735_03774 | A0A0H2ZIC3 | Positive | 4011537 - 4012490 | 35494.6 |
| 4-aminobutyrate aminotransferase gabt | PH7735_03775 | Q7SY54 | Positive | 4012553 - 4013818 | 45429.9 |
| homoserine kinase | PH7735_03776 | Not Available | Positive | 4013815 - 4014789 | 35436.7 |
| nicotinate phosphoribosyltransferase | PH7735_03777 | B9J6S5 | Negative | 4014786 - 4016078 | 49710.7 |
| nicotinamidase/pyrazinamidase | PH7735_03778 | P21369 | Negative | 4016159 - 4016758 | 21266.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
