Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator puur | PH7735_03759 | P77626 | Negative | 3991137 - 3991700 | 20335.0 |
| beta-ketothiolase bktb | PH7735_03760 | Q0KBP1 | Positive | 3991831 - 3993006 | 40221.5 |
| penicillin-binding protein f | PH7735_03761 | P76577 | Negative | 3993075 - 3995120 | 73887.0 |
| hypothetical protein | PH7735_03762 | P76578 | Negative | 3995117 - 4000552 | 196208.0 |
| signal transduction histidine-protein kinase bara | PH7735_03763 | Q9F8D7 | Positive | 4000694 - 4002883 | 81063.4 |
| hypothetical protein | PH7735_03764 | Q16D64 | Negative | 4002880 - 4003662 | 29267.0 |
| atp-dependent dna helicase recq | PH7735_03765 | P15043 | Negative | 4003694 - 4005733 | 74142.8 |
| yggt family protein | PH7735_03766 | Not Available | Negative | 4005818 - 4006099 | 10862.9 |
| hypothetical protein | PH7735_03767 | Q5XIE1 | Positive | 4006231 - 4006767 | 20790.4 |
| vacuole effluxer atg22 like protein | PH7735_03768 | Not Available | Positive | 4007097 - 4008209 | 40011.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
