Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03749 | Not Available | Negative | 3980319 - 3981323 | 36477.2 |
| hypothetical protein | PH7735_03750 | Not Available | Negative | 3981444 - 3981971 | 18544.0 |
| l-asparaginase ii | PH7735_03751 | Not Available | Positive | 3982135 - 3983130 | 35289.2 |
| hypothetical protein | PH7735_03752 | Not Available | Negative | 3983223 - 3983537 | 10757.7 |
| phosphoserine phosphatase | PH7735_03753 | O74382 | Negative | 3983612 - 3984484 | 30786.8 |
| phosphoserine aminotransferase | PH7735_03754 | Q8TNI1 | Positive | 3984713 - 3985858 | 40842.4 |
| d-3-phosphoglycerate dehydrogenase | PH7735_03755 | P35136 | Positive | 3985920 - 3987515 | 56685.5 |
| serine/threonine-protein phosphatase 1 | PH7735_03756 | Not Available | Positive | 3987611 - 3988339 | 27123.2 |
| l-threonine 3-dehydrogenase | PH7735_03757 | Q5LN53 | Negative | 3988753 - 3989796 | 37555.4 |
| 2-amino-3-ketobutyrate coenzyme a ligase | PH7735_03758 | P0AB78 | Negative | 3989793 - 3990980 | 42947.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
