Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_03739 | Not Available | Positive | 3970301 - 3971866 | 55689.3 |
| hypothetical protein | PH7735_03740 | Not Available | Positive | 3971892 - 3972986 | 40446.9 |
| hypothetical protein | PH7735_03741 | Not Available | Negative | 3973006 - 3973386 | 13822.2 |
| hypothetical protein | PH7735_03742 | Not Available | Positive | 3973571 - 3975139 | 55447.2 |
| glutamine-binding periplasmic protein precursor | PH7735_03743 | P0AEQ5 | Positive | 3975249 - 3976325 | 39185.0 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | PH7735_03744 | Q28VJ6 | Negative | 3976392 - 3977219 | 29461.0 |
| putative lysine decarboxylase | PH7735_03745 | Not Available | Positive | 3977289 - 3978233 | 35128.1 |
| hypothetical protein | PH7735_03746 | Not Available | Negative | 3978239 - 3978448 | 7547.32 |
| hypothetical protein | PH7735_03747 | Not Available | Negative | 3978581 - 3978964 | 13319.1 |
| dual-specificity rna methyltransferase rlmn | PH7735_03748 | Q1GC70 | Negative | 3979051 - 3980247 | 44404.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
