Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator mcbr | PH7735_03729 | Not Available | Positive | 3956824 - 3957513 | 25197.2 |
| taurine--pyruvate aminotransferase | PH7735_03730 | Not Available | Positive | 3957618 - 3959006 | 50366.4 |
| spermidine/putrescine import atp-binding protein pota | PH7735_03731 | Q1AS06 | Positive | 3959440 - 3960543 | 41084.4 |
| abc-type uncharacterized transport system, periplasmic component | PH7735_03732 | Q9I6R6 | Positive | 3960617 - 3961720 | 40205.0 |
| spermidine/putrescine transport system permease protein potb | PH7735_03733 | Not Available | Positive | 3961842 - 3963113 | 47029.9 |
| inner membrane abc transporter permease protein ydcv | PH7735_03734 | P0A625 | Positive | 3963119 - 3964294 | 42033.6 |
| membrane-bound lytic murein transglycosylase b precursor | PH7735_03735 | P41052 | Negative | 3964389 - 3965768 | 49885.2 |
| ribonuclease r | PH7735_03736 | P21499 | Negative | 3965896 - 3968151 | 82762.9 |
| transferase 1, rsam/selenodomain-associated | PH7735_03737 | Not Available | Negative | 3968250 - 3968834 | 21560.1 |
| succinyl-diaminopimelate desuccinylase | PH7735_03738 | Q1GC88 | Negative | 3968843 - 3969988 | 40657.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
