Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| distal rod protein | PH7735_03709 | Q98HE3 | Negative | 3940786 - 3941499 | 25297.8 |
| flagellar biosynthetic protein fliq | PH7735_03710 | P69982 | Negative | 3941503 - 3941772 | 9613.17 |
| flagellar hook-basal body protein flie | PH7735_03711 | Not Available | Negative | 3941772 - 3942062 | 10165.9 |
| putative proximal rod protein | PH7735_03712 | Q44336 | Negative | 3942071 - 3942457 | 14456.0 |
| putative proximal rod protein | PH7735_03713 | Not Available | Negative | 3942472 - 3942858 | 13773.2 |
| flagellum-specific atp synthase | PH7735_03714 | P0CAT8 | Positive | 3942943 - 3944268 | 47557.9 |
| hypothetical protein | PH7735_03715 | Not Available | Negative | 3944281 - 3945069 | 29089.0 |
| flagellar biosynthesis repressor flbt | PH7735_03716 | P21297 | Negative | 3945066 - 3945470 | 15068.4 |
| flagellar biosynthesis regulatory protein flaf | PH7735_03717 | Not Available | Negative | 3945467 - 3945841 | 13910.8 |
| flagellin | PH7735_03718 | P13118 | Negative | 3945918 - 3947129 | 40724.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
